Gluten-Free Pumpkin Muffins – Soft, Spiced, and Delicious

These Gluten-Free Pumpkin Muffins are the perfect fall-inspired treat. Packed with warm spices, rich pumpkin flavor, and a tender, moist texture, they’re a delicious way to enjoy pumpkin season without the gluten. Whether you’re following a gluten-free diet or simply love pumpkin treats, these muffins are a must-try!

Using a blend of gluten-free flours and simple ingredients, this recipe ensures your muffins are both flavorful and fluffy. They’re naturally sweetened and can easily be customized with mix-ins like chocolate chips or nuts for extra indulgence.

Perfect for breakfast, a snack, or dessert, these muffins are quick to make and freezer-friendly for easy meal prep. Let’s gather the ingredients and get started on this crowd-pleasing recipe!

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Ingredients for Gluten-Free Pumpkin Muffins

These simple and wholesome ingredients come together to create moist and flavorful Gluten-Free Pumpkin Muffins that everyone will enjoy.

Dry Ingredients

  • 1 ½ cups gluten-free all-purpose flour – Provides structure and texture. Choose a blend with xanthan gum for best results.
  • 1 teaspoon baking powder – Helps the muffins rise for a fluffy texture.
  • ½ teaspoon baking soda – Works with the baking powder to enhance the rise.
  • ½ teaspoon salt – Balances the sweetness and enhances flavor.
  • 1 teaspoon ground cinnamon – Adds warm, comforting spice.
  • ½ teaspoon ground nutmeg – Complements the pumpkin for a rich, fall-inspired flavor.
  • ¼ teaspoon ground ginger (optional) – A touch of zing to elevate the spice profile.

Wet Ingredients

  • 1 cup canned pumpkin puree – The star ingredient for moisture and flavor. (Do not use pumpkin pie filling)
  • ½ cup granulated sugar – Sweetens the muffins without overpowering the pumpkin. (Substitute: coconut sugar or brown sugar)
  • ¼ cup honey or maple syrup – Adds natural sweetness and moisture.
  • ⅓ cup vegetable oil or melted coconut oil – Keeps the muffins tender and moist.
  • 2 large eggs, at room temperature – Binds the ingredients and provides structure.
  • 1 teaspoon pure vanilla extract – Enhances the overall flavor.

Optional Mix-Ins

  • ½ cup chocolate chips – Adds a touch of indulgence to each bite.
  • ½ cup chopped pecans or walnuts – For a crunchy, nutty twist.
  • 2 tablespoons pumpkin seeds (pepitas) – A decorative and nutritious topping.

Instructions for Gluten-Free Pumpkin Muffins

Follow these simple steps to bake perfectly moist and spiced Gluten-Free Pumpkin Muffins:

Step 1: Preheat the Oven and Prepare the Muffin Tin

Preheat your oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or grease it lightly with non-stick spray to prevent sticking.

Step 2: Combine the Dry Ingredients

In a medium-sized mixing bowl, whisk together the gluten-free all-purpose flour, baking powder, baking soda, salt, cinnamon, nutmeg, and ginger. Mixing the dry ingredients first ensures the spices and leavening agents are evenly distributed.

Step 3: Mix the Wet Ingredients

In a large mixing bowl, combine the pumpkin puree, granulated sugar, honey or maple syrup, vegetable oil, eggs, and vanilla extract. Whisk the ingredients until smooth and well-blended.

Step 4: Combine the Wet and Dry Mixtures

Gradually add the dry ingredients to the wet mixture, folding gently with a spatula or wooden spoon. Stir just until combined—overmixing can result in dense muffins. The batter should be thick and slightly lumpy.

Step 5: Add Optional Mix-Ins

If using chocolate chips, nuts, or other mix-ins, fold them into the batter gently to ensure they’re evenly distributed.

Step 6: Fill the Muffin Tin

Spoon the batter evenly into the prepared muffin cups, filling each about ¾ full. For a decorative touch, sprinkle the tops with pumpkin seeds or a few extra chocolate chips.

Step 7: Bake the Muffins

Place the muffin tin in the preheated oven and bake for 18–22 minutes, or until a toothpick inserted into the center comes out clean. Avoid overbaking, as this can dry out the muffins.

Step 8: Cool and Serve

Remove the muffins from the oven and let them cool in the tin for 5 minutes before transferring them to a wire rack. Serve warm or at room temperature for the best flavor and texture.

Top-down view of freshly baked Gluten-Free Pumpkin Muffins with a rich golden-brown crust

Tips for Success

Choose the Right Gluten-Free Flour

Using a gluten-free all-purpose flour blend with xanthan gum ensures the muffins hold together well and have a light texture. If your blend doesn’t include xanthan gum, add ½ teaspoon to the dry ingredients.

Don’t Overmix the Batter

When combining the wet and dry ingredients, stir just until no streaks of flour remain. Overmixing can result in dense muffins with a gummy texture. A slightly lumpy batter is perfectly fine.

Use Pumpkin Puree, Not Pumpkin Pie Filling

Canned pumpkin puree is unsweetened and allows you to control the flavor and sweetness of the muffins. Pumpkin pie filling contains added sugar and spices, which can throw off the recipe.

Add Mix-Ins Last

Fold in chocolate chips, nuts, or seeds after combining the batter. This helps distribute them evenly without overworking the mixture.

Check for Doneness Early

Start checking the muffins at the 18-minute mark. Insert a toothpick into the center—if it comes out clean or with a few moist crumbs, the muffins are ready. Overbaking can dry them out.

Customize the Sweetness

If you prefer a less sweet muffin, reduce the granulated sugar by 2 tablespoons. For a naturally sweeter option, increase the honey or maple syrup slightly.

Let Them Cool Before Storing

Allow the muffins to cool completely on a wire rack before storing them in an airtight container. This prevents excess moisture from making them soggy.

Variants of Gluten-Free Pumpkin Muffins

Chocolate Chip Pumpkin Muffins

Fold in ½ cup of dark chocolate chips for a rich, sweet addition. The chocolate pairs wonderfully with the spiced pumpkin flavor and adds a touch of indulgence.

Nutty Pumpkin Muffins

Mix ½ cup of chopped pecans, walnuts, or almonds into the batter for a crunchy texture. You can also sprinkle some on top before baking for a decorative finish.

Dairy-Free Pumpkin Muffins

Replace the vegetable oil with melted coconut oil and ensure your gluten-free flour blend is dairy-free. This creates muffins that are both gluten- and dairy-free without sacrificing flavor or texture.

Pumpkin Spice Latte Muffins

Add 1 teaspoon of instant coffee granules to the wet ingredients for a subtle coffee kick. Pair with pumpkin spice seasoning for a true PSL-inspired treat.

Vegan Pumpkin Muffins

Replace the eggs with flax eggs (1 tablespoon ground flaxseed + 3 tablespoons water per egg) and use maple syrup instead of honey. This version is completely plant-based while keeping the muffins moist and flavorful.

Cranberry Pumpkin Muffins

Substitute the chocolate chips with ½ cup of dried cranberries or fresh cranberries for a tart, fruity contrast to the pumpkin’s sweetness.

Protein-Packed Pumpkin Muffins

Add 1 scoop (about 30g) of unflavored or vanilla protein powder to the dry ingredients. Increase the almond milk slightly to maintain the batter’s consistency.

Here’s the Why You’ll Love This Recipe section for the Gluten-Free Pumpkin Muffins:


Why You’ll Love This Gluten-Free Pumpkin Muffins Recipe

Naturally Gluten-Free

This recipe uses a gluten-free flour blend, making it safe and delicious for those with gluten sensitivities or following a gluten-free diet.

Packed with Pumpkin Flavor

Made with real pumpkin puree and warm spices, these muffins capture the cozy, comforting flavors of fall in every bite.

Moist and Tender Texture

Thanks to the pumpkin, oil, and honey, these muffins stay perfectly moist while maintaining a light and fluffy texture.

Easy to Customize

From chocolate chips to nuts and even cranberries, you can easily adapt the recipe to include your favorite mix-ins or toppings.

Simple to Make

With minimal prep and basic ingredients, this recipe is perfect for both novice and experienced bakers. You’ll have bakery-quality muffins ready in under 30 minutes.

Great for Meal Prep

These muffins are freezer-friendly, making them ideal for preparing ahead and enjoying throughout the week as a quick breakfast or snack.

Kid-Friendly

The naturally sweet flavor and soft texture make these muffins a hit with kids, whether packed in lunchboxes or served as an afternoon treat.

Serving Suggestions for Gluten-Free Pumpkin Muffins

Pair with a Warm Beverage

Enjoy these muffins with a cup of hot coffee, tea, or a pumpkin spice latte to enhance their cozy, spiced flavor.

Add a Spread

Serve warm muffins with a dollop of butter, cream cheese, or a drizzle of maple syrup for extra indulgence. For a healthier option, try almond butter or a touch of honey.

Make It a Meal

Turn these muffins into a complete breakfast by pairing them with a side of Greek yogurt and fresh fruit. The combination adds protein and freshness to your meal.

Great for Brunch

Include these muffins in a brunch spread alongside savory dishes like scrambled eggs, avocado toast, or a veggie quiche. Their warm, sweet flavor balances savory items perfectly.

On-the-Go Snack

Pack a muffin in your lunchbox or tote for a convenient and satisfying snack. They travel well and make a great mid-morning or afternoon energy boost.

Dessert Option

Top the muffins with a light cream cheese frosting and serve them as a gluten-free dessert for gatherings or celebrations.

FAQs About Gluten-Free Pumpkin Muffins

Can I use homemade pumpkin puree instead of canned?

Yes, homemade pumpkin puree works beautifully in this recipe. Be sure to strain it if it’s too watery to match the consistency of canned puree.

What type of gluten-free flour is best for this recipe?

A gluten-free all-purpose flour blend with xanthan gum is ideal. The xanthan gum acts as a binder, providing structure to the muffins. If your blend doesn’t include xanthan gum, add ½ teaspoon to the dry ingredients.

Can I make these muffins vegan?

Absolutely! Replace the eggs with flax eggs (1 tablespoon ground flaxseed + 3 tablespoons water per egg) and use maple syrup instead of honey. Ensure your gluten-free flour and any mix-ins are also vegan.

How can I prevent the muffins from being dense?

To avoid dense muffins, don’t overmix the batter. Stir just until the dry ingredients are incorporated. Also, check that your leavening agents (baking powder and baking soda) are fresh and not expired.

Can I freeze these muffins?

Yes, these muffins freeze very well. Place the cooled muffins in an airtight container or freezer-safe bag and freeze for up to 3 months. Thaw at room temperature or warm in the microwave before serving.

Can I add extra pumpkin spice?

Absolutely! If you love the warm spices of fall, feel free to increase the cinnamon or add extra nutmeg, ginger, or cloves to taste.

How do I store these muffins?

Store the muffins in an airtight container at room temperature for up to 2 days. For longer storage, refrigerate them for up to 5 days or freeze them for up to 3 months.

Conclusion

These Gluten-Free Pumpkin Muffins are a delightful blend of cozy fall flavors and wholesome ingredients. With their tender texture, rich pumpkin taste, and warm spices, they’re a versatile treat perfect for breakfast, snack time, or even dessert.

Whether you stick to the classic recipe or try one of the many variations, these muffins are sure to become a favorite in your gluten-free baking repertoire. They’re quick to prepare, easy to customize, and freezer-friendly, making them ideal for busy schedules or meal prep.

Now it’s your turn to bake a batch! Enjoy them fresh with your favorite beverage, pack them as an on-the-go snack, or share them with family and friends—these muffins are bound to impress.

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